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Publications

Publications resulting from research conducted by STDBP Scholars during their MS program at Texas State University can be found below.

Year Citation
2021 Paiz EA, Lewis KA, Whitten ST. Structural and Energetic Characterization of the Denatured State from the Perspectives of Peptides, the Coil Library, and Intrinsically Disordered Proteins. Molecules. 2021 Jan 26;26(3):634. doi: 10.3390/molecules26030634. PMID: 33530506; PMCID: PMC7865441.
2021 Paiz EA, Allen JH, Correia JJ, Fitzkee NC, Hough LE, Whitten ST. Beta turn propensity and a model polymer scaling exponent identify intrinsically disordered phase-separating proteins. J Biol Chem. 2021 Nov;297(5):101343. doi: 10.1016/j.jbc.2021.101343. Epub 2021 Oct 26. PMID: 34710373; PMCID: PMC8592878.
2021 Maslivetc V, Laguera B, Chandra S, Dasari R, Olivier WJ, Smith JA, Bissember AC, Masi M, Evidente A, Mathieu V, Kornienko A. Polygodial and Ophiobolin A Analogues for Covalent Crosslinking of Anticancer Targets. Int J Mol Sci. 2021 Oct 19;22(20):11256. doi: 10.3390/ijms222011256. PMID: 34681916; PMCID: PMC8537666.
2020 Lu Y, Boswell M, Boswell W, Salinas RY, Savage M, Reyes J, Walter S, Marks R, Gonzalez T, Medrano G, Warren WC, Schartl M, Walter RB. Global assessment of organ specific basal gene expression over a diurnal cycle with analyses of gene copies exhibiting cyclic expression patterns. BMC Genomics. 2020 Nov 11;21(1):787. doi: 10.1186/s12864-020-07202-9. PMID: 33176680; PMCID: PMC7659085.
2020 Lu Y, Olivas TJ, Boswell M, Boswell W, Warren WC, Schartl M, Walter RB. Intra-Strain Genetic Variation of Platyfish (Xiphophorus maculatus) Strains Determines Tumorigenic Trajectory. Front Genet. 2020 Oct 6;11:562594. doi: 10.3389/fgene.2020.562594. PMID: 33133148; PMCID: PMC7573281.
2020 Zhao, Z., Shelton, S.D., Oviedo, A. et al. The PLAGL2/MYCN/miR-506-3p interplay regulates neuroblastoma cell fate and associates with neuroblastoma progression. J Exp Clin Cancer Res 39, 41 (2020). https://doi.org/10.1186/s13046-020-1531-2
2019 English LR, Voss SM, Tilton EC, Paiz EA, So S, Parra GL, Whitten ST. Impact of Heat on Coil Hydrodynamic Size Yields the Energetics of Denatured State Conformational Bias. J Phys Chem B. 2019 Nov 27;123(47):10014-10024. doi: 10.1021/acs.jpcb.9b09088. Epub 2019 Nov 14. PMID: 31679343; PMCID: PMC7278112.
2019 English LR, Voss SM, Tilton EC, Paiz EA, So S, Parra GL, Whitten ST. Impact of Heat on Coil Hydrodynamic Size Yields the Energetics of Denatured State Conformational Bias. J Phys Chem B. 2019 Nov 27;123(47):10014-10024. doi: 10.1021/acs.jpcb.9b09088. Epub 2019 Nov 14. PMID: 31679343; PMCID: PMC7278112.
2018 Lu Y, Boswell M, Boswell W, Kneitz S, Klotz B, Savage M, Salinas R, Marks R, Regneri J, Postlethwait J, Warren WC, Schartl M, Walter R. Gene expression variation and parental allele inheritance in a Xiphophorus interspecies hybridization model. PLoS Genet. 2018 Dec 26;14(12):e1007875. doi: 10.1371/journal.pgen.1007875. PMID: 30586357; PMCID: PMC6324826.
2018 Walter RB, Boswell M, Chang J, Boswell WT, Lu Y, Navarro K, Walter SM, Walter DJ, Salinas R, Savage M. Waveband specific transcriptional control of select genetic pathways in vertebrate skin (Xiphophorus maculatus). BMC Genomics. 2018 May 10;19(1):355. doi: 10.1186/s12864-018-4735-5. PMID: 29747585; PMCID: PMC5946439.
2018 Gujjari A, Rodriguez BV, Pescador J, Maeder C, Beall GW, Lewis LK. Factors affecting the association of single- and double-stranded RNAs with montmorillonite nanoclays. Int J Biol Macromol. 2018 Apr 1;109:551-559. doi: 10.1016/j.ijbiomac.2017.12.124. Epub 2017 Dec 22. PMID: 29277420; PMCID: PMC6247799.
2017 Castro JM, Horn DA, Pu X, Lewis KA. Recombinant expression and purification of the RNA-binding LARP6 proteins from fish genetic model organisms. Protein Expr Purif. 2017 Jun;134:147-153. doi: 10.1016/j.pep.2017.04.004. Epub 2017 Apr 8. PMID: 28400296; PMCID: PMC5546403.
2017 Gonzalez TJ, Lu Y, Boswell M, Boswell W, Medrano G, Walter S, Ellis S, Savage M, Varga ZM, Lawrence C, Sanders G, Walter RB. Fluorescent light exposure incites acute and prolonged immune responses in zebrafish (Danio rerio) skin. Comp Biochem Physiol C Toxicol Pharmacol. 2018 Jun;208:87-95. doi: 10.1016/j.cbpc.2017.09.009. Epub 2017 Sep 29. PMID: 28965927; PMCID: PMC5876079.
2017 Lu Y, Reyes J, Walter S, Gonzalez T, Medrano G, Boswell M, Boswell W, Savage M, Walter R. Characterization of basal gene expression trends over a diurnal cycle in Xiphophorus maculatus skin, brain and liver. Comp Biochem Physiol C Toxicol Pharmacol. 2018 Jun;208:2-11. doi: 10.1016/j.cbpc.2017.11.013. Epub 2017 Dec 5. PMID: 29203320; PMCID: PMC5936649.
2017 Boiko N, Medrano G, Montano E, Jiang N, Williams CR, Madungwe NB, Bopassa JC, Kim CC, Parrish JZ, Hargreaves KM, Stockand JD, Eaton BA. TrpA1 activation in peripheral sensory neurons underlies the ionic basis of pain hypersensitivity in response to vinca alkaloids. PLoS One. 2017 Oct 30;12(10):e0186888. doi: 10.1371/journal.pone.0186888. PMID: 29084244; PMCID: PMC5662086.
2017 Boswell WT, Boswell M, Walter DJ, Navarro KL, Chang J, Lu Y, Savage MG, Shen J, Walter RB. Exposure to 4100K fluorescent light elicits sex specific transcriptional responses in Xiphophorus maculatus skin. Comp Biochem Physiol C Toxicol Pharmacol. 2018 Jun;208:96-104. doi: 10.1016/j.cbpc.2017.09.008. Epub 2017 Sep 29. PMID: 28965926; PMCID: PMC5876067.
2017 English LR, Tilton EC, Ricard BJ, Whitten ST. Intrinsic α helix propensities compact hydrodynamic radii in intrinsically disordered proteins. Proteins. 2017 Feb;85(2):296-311. doi: 10.1002/prot.25222. Epub 2017 Jan 5. PMID: 27936491; PMCID: PMC5258847.
2016 Weigum S, McIvor E, Munoz C, Sutton M, Feng R, Cantu T, Betancourt, T. Weigum, S., McIvor, E., Munoz, C. et al. Targeted therapy of hepatocellular carcinoma with aptamer-functionalized biodegradable nanoparticles. J Nanopart Res 18, 341 (2016). https://doi.org/10.1007/s11051-016-3633-5J Nanopart Res (2016) 18: 341
2016 Rodriguez BV, Malczewskyj ET, Cabiya JM, Lewis LK, Maeder C. Identification of RNase-resistant RNAs in Saccharomyces cerevisiae extracts: Separation from chromosomal DNA by selective precipitation. Anal Biochem. 2016 Jan 1;492:69-75. doi: 10.1016/j.ab.2015.09.017. Epub 2015 Sep 28. PMID: 26416692; PMCID: PMC4641763.
2015 Walter RB, Walter DJ, Boswell WT, Caballero KL, Boswell M, Lu Y, Chang J, Savage MG. Exposure to fluorescent light triggers down regulation of genes involved with mitotic progression in Xiphophorus skin. Comp Biochem Physiol C Toxicol Pharmacol. 2015 Dec;178:93-103. doi: 10.1016/j.cbpc.2015.08.006. Epub 2015 Sep 1. PMID: 26334372; PMCID: PMC4662871.
2015 Chang J, Lu Y, Boswell WT, Boswell M, Caballero KL, Walter RB. Molecular genetic response to varied wavelengths of light in Xiphophorus maculatus skin. Comp Biochem Physiol C Toxicol Pharmacol. 2015 Dec;178:104-115. doi: 10.1016/j.cbpc.2015.10.002. Epub 2015 Oct 14. PMID: 26460196; PMCID: PMC4662885.
2015 Rodriguez BV, Pescador J, Pollok N, Beall GW, Maeder C, Lewis LK. Impact of size, secondary structure, and counterions on the binding of small ribonucleic acids to layered double hydroxide nanoparticles. Biointerphases. 2015 Dec 30;10(4):041007. doi: 10.1116/1.4936393. PMID: 26620852; PMCID: PMC4670447.
2014 Perez RB, Tischer A, Auton M, Whitten ST. Alanine and proline content modulate global sensitivity to discrete perturbations in disordered proteins. Proteins. 2014 Dec;82(12):3373-84. doi: 10.1002/prot.24692. Epub 2014 Oct 10. PMID: 25244701; PMCID: PMC4237723.